
usage: qualimap <tool> [options]

To launch GUI leave <tool> empty.

Available tools:

    bamqc            Evaluate NGS mapping to a reference genome
    rnaseq           Evaluate RNA-seq alignment data
    counts           Counts data analysis (further RNA-seq data evaluation)
    multi-bamqc      Compare QC reports from multiple NGS mappings
    clustering       Cluster epigenomic signals
    comp-counts      Compute feature counts


